- A header that names the OS and gives the version number-- Sunrise – 0.9 and release date
- A short “synopsis” blurb – A couple of sentences that market the features of this OS
- A bulleted list of the available software – each line should be a hyper link to the documentation for that software tool
Sunrise will have
Intro to this IBIC Service – this will be a Voice over PPT with a survey of the features and functionality of the Sunrise OS.
Something like I (Nolan) did in the first class that covered the functionality built into the Student VM.
Image processing Software
- FSL 4.1 -- http://www.fmrib.ox.ac.uk/fsl/fsl/list.html
Installed in /usr/share/fsl/4.1; PATH to /usr/share/fsl/4.1/bin
Download freesurfer-Linux-centos4_x86_64-stable-pub-v5.0.0.tar.gz; Installed in /usr/local/freesurfer
Conversion Software ( DICOM to NIFTI)
- MRIConvert 2.0 -- http://lcni.uoregon.edu/~jolinda/MRIConvert/
NOTE version 190 currently installed, via apt-get install, to /usr/local/MRIConvert_190/MRIConvert
- dcm2nii (???) -- http://www.cabiatl.com/mricro/mricron/dcm2nii.html
NOTE version 2 November 2010 (Debian) currently installed, via apt-get install, to /usr/bin/dcm2nii
- dicom3tools need documentation – don’t need “how to install” rather need “how to use / what is available”
Libraries installed to /usr/share/dicom3tools
Other Tools
- ibic Utilities – documentation needs to be written
Training / Support
fMRI analysis – link to lectures and hands on tutorials