The following is a list of applications installed on the new IBIC Debian 7 64-bit neuroimaging OS, DEvolution
START
Red = broken/needs repair
Black = not requested
Green = installed
camino
camino-trackvis
geomview
BrainVISA / Anatomist
Truecrypt
(x)medcon
SOX
Wine
fmristat
Princeton MVPA Toolbox (for MATLAB)
NIS tools
recode
Searchmight
logistf
MASS
tth (text to html translator)
randomize-lines
libexamcard
qemu-kvm
mendeleydesktop
pandas
3D Slicer, Joint Anisotropic LMMSE Filter for Stationary Rician noise removal in DWI
fMRI_CPCA
BrainSuite13
BRAINS3 Brain Image Analysis (BIA)
gthumb
blender
nii_tools
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Debian 7 "Wheezy" 64 bit OS
UW NetID Authentication and authorization w/ Kerberos, LDAP
NVIDIA Driver for dual monitors
Neuro Debian and apt repository
FreeNX server + nomachine client
Cairo 2D vector graphics library
X2Go Server
X2Go Client
FSL 5.0.7
Additional version (on amygdala), FSL 4.1
FreeSurfer 5.3
gawk
MATLAB 2014b
R and rstudio
emacs
ImageMagick
Virtual Box 4.3.18
Google Chrome
Add 32 bit architecture support
I STAT (Pipe Stat)
Anaconda CE Python
Packages Included in Anaconda
Scientific & Data Analysis Packages Included in Anaconda
Other Packages included in Anaconda
PyXNAT 0.9.5.3
afni
gnuplot
artfind(er)
Brainvox
DTI TK
svn
camino
camino-trackvis
tree
Diffusion Toolkit 0.6.2.2 and TrackVis 0.5.2.2
ANTS (Advanced Normalization Tools) 1.9.1
ANTS 2.1.0 release candidate 3
mrtrix 0.2.10
ppss
octave
audacity
BioImage Suite
Matlab Compiler Runtime
OLDER version v81
Iowa_Tools
AIR5.0, cvio, idl_tools, local_tools, regression, tal_support
AIR (Automated Image Registration) 5.3.0
ART (Automatic Registration Toolbox)
ess (Emacs Speaks Statistics)
ed, for R configuration
java development kit, for install R packages
Classic Sun Grid Engine 6.2u5
qmon
SPM12
X11 VNC Server
DTIPrepWorld, DTIPrep
Cmake 2.8.9
Insight Toolkit (ITK) 4.6.1
Visualization Toolkit (VTK) 6.0.0
mayavi
EEGLAB v13
VBM8 toolbox (for SPM12)
DWIConvert
Philips PAR/REC to ANALYZE converter
Katie's compiled version
scrot
McRetroTS
QAtools
MRIcro
LaTeX and gedit
dicom3tools
Psychtoolbox 3.0.12
REST
DPARSF
Nifti toolkit (Tools for NIfTI and ANALYZE image)
DCMTK - DICOM Toolkit 3.6.0
MRIConvert
Group ICA Of fMRI Toolbox (GIFT)
MRIcron 4AUG2014
MRIcronm/NPM/dcm2nii