The following is a list of applications installed on the new IBIC Debian 7 64-bit neuroimaging OS, DEvolution

START

 

Red = broken/needs repair

Black = not requested

Green = installed

camino

camino-trackvis 

geomview

BrainVISA / Anatomist

Truecrypt

(x)medcon

SOX

Wine

fmristat

Princeton MVPA Toolbox (for MATLAB) 

NIS tools  

recode

Searchmight

logistf

MASS

tth (text to html translator)

randomize-lines

libexamcard

qemu-kvm

mendeleydesktop

pandas

3D Slicer, Joint Anisotropic LMMSE Filter for Stationary Rician noise removal in DWI

fMRI_CPCA

BrainSuite13

BRAINS3 Brain Image Analysis (BIA)

gthumb

blender

nii_tools

-------------

Debian 7 "Wheezy" 64 bit OS

UW NetID Authentication and authorization w/ Kerberos, LDAP

 NVIDIA Driver for dual monitors

Neuro Debian and apt repository

FreeNX server + nomachine client

Cairo 2D vector graphics library

X2Go Server

X2Go Client

FSL 5.0.7

Additional version (on amygdala), FSL 4.1

FreeSurfer 5.3 

gawk

MATLAB 2014b

R and rstudio

emacs

ImageMagick

Virtual Box 4.3.18

Google Chrome

Add 32 bit architecture support

I STAT (Pipe Stat)

Anaconda CE Python


Packages Included in Anaconda

Scientific & Data Analysis Packages Included in Anaconda

Biopython
BitArray 
Cubes 
Disco 
Gdata 
h5py 
HDF5 
Imaging (PIL) 
lxml 
Matplotlib 
MPI4Py 
MPICH2 
NetworkX 
NumExpr 
Numpy 
OpenCV 
Pandas 
PySAL 
PySam 
PyTables 
SciPy 
Scikit-Image 
Scikit-Learn 
Spyder 
Statsmodels 
SymPy 
Theano 

 

Other Packages included in Anaconda

Astropy
Boto
Cython
DateUtil
Distribute
Docutils
Erlang
Flask
Gevent
Gevent-Websocket
Gevent-Zeromq
Googlecl
Greenlet
grin
IPython
Jinja2
Libevent
Libpng
LLVM
MDP
Meta
MinGW
MKL
NLTK
Nose
Pip
Ply
Psutil
Py
Py2Cairo
PycURL
PyFlakes
Pygments
Pyparsing
PyTest
Python
PyTZ
PyYAML
PyZMQ
QT
Redis-Py
Requests
Six
Sphinx
SQLAlchemy
Tornado
xlrd
xlwt